Package: geoR 1.9-4

geoR: Analysis of Geostatistical Data

Geostatistical analysis including variogram-based, likelihood-based and Bayesian methods. Software companion for Diggle and Ribeiro (2007) <doi:10.1007/978-0-387-48536-2>.

Authors:Paulo Justiniano Ribeiro Jr [aut, cre] <[email protected]>, Peter Diggle [aut, cre] <[email protected]>, Ole Christensen [ctb], Martin Schlather [ctb], Roger Bivand [ctb], Brian Ripley [ctb]

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geoR/json (API)

# Install 'geoR' in R:
install.packages('geoR', repos = c('https://paulojus.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Ksat - Saturated Hydraulic Conductivity
  • ca20 - Calcium content in soil samples
  • camg - Calcium and magnesium content in soil samples
  • elevation - Surface Elevations
  • gambia - Gambia Malaria Data
  • gambia.borders - Gambia Malaria Data
  • gambia.map - Gambia Malaria Data
  • head - Head observations in a regional confined aquifer
  • hoef - Data for spatial analysis of experiments
  • isaaks - Data from Isaaks and Srisvastava's book
  • kattegat - Kattegat basin salinity data
  • landim1 - Data from Landim's book
  • parana - Rainfall Data from Parana State, Brasil
  • rongelap - Radionuclide Concentrations on Rongelap Island
  • s100 - Simulated Data-Sets which Illustrate the Usage of the Package geoR
  • s121 - Simulated Data-Sets which Illustrate the Usage of the Package geoR
  • s256i - Simulated Data-Set which Illustrate the Usage of krige.bayes
  • sic.100 - Spatial Interpolation Comparison data
  • sic.367 - Spatial Interpolation Comparison data
  • sic.all - Spatial Interpolation Comparison data
  • sic.borders - Spatial Interpolation Comparison data
  • sic.some - Spatial Interpolation Comparison data
  • soil250 - Soil chemistry properties data set
  • soja98 - Soya bean production and other variables in a uniformity trial
  • tce - TCE concentrations in groundwater in a vertical cross section
  • wo - Kriging example data from Webster and Oliver
  • wolfcamp - Wolfcamp Aquifer Data
  • wrc - Points of a water retention curve data set

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

81 exports 10 stars 6.47 score 4 dependencies 12 dependents 102 mentions 1.5k scripts 4.4k downloads

Last updated 7 months agofrom:e5af228f35. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 13 2024
R-4.5-win-x86_64OKSep 13 2024
R-4.5-linux-x86_64OKSep 13 2024
R-4.4-win-x86_64OKSep 13 2024
R-4.4-mac-x86_64OKSep 13 2024
R-4.4-mac-aarch64OKSep 13 2024
R-4.3-win-x86_64OKSep 13 2024
R-4.3-mac-x86_64OKSep 13 2024
R-4.3-mac-aarch64OKSep 13 2024

Exports:.bilinearformXAY.check.locations.cond.sim.cor.number.diagquadraticformXAX.geoR_inout.geoR_pip.geoR.check.locations.ldots.set.prepare.graph.krige.bayes.solve.geoRas.geodatabacktransform.momentsBCtransformboot.variofitboxcoxfitcoords.anisocoords2coordscov.spatialdboxcoxdiffpairsdinvchisqdup.coordseyefitgeoRCovModelsglobalvargrfhist.krige.bayesis.geodatajitter2djitterDupCoordskrige.bayeskrige.controlkrige.convkrweightskslinelegend.krigelikfitlikfit.limitslikfit.nospatiallikfitBGCCMlines.variomodellocations.insideloccoordsloglik.GRFloglik.spatialloglikBGCCMmaternmodel.controlnearlocoutput.controlpars.limitsplot.1dplot.geodatapoints.geodatapolygridpost2priorpracticalRangepred_gridprior.controlproflikrboxcoxread.geodatarect.coordsrinvchisqsample.geodatasample.posteriorsample.priorset.coords.limsstatistics.predictivesubareatrend.spatialvarcov.spatialvarcovBGCCMvariofitvariogvariog.mc.envvariog.model.envvariog4xvalidzoom.coords

Dependencies:latticeMASSspsplancs

Readme and manuals

Help Manual

Help pageTopics
Adapts nlm for Constraints in the Parameter Values.nlmP
Converts an Object to the Class "geodata"as.data.frame.geodata as.geodata as.geodata.default as.geodata.geodata.frame as.geodata.SpatialPointsDataFrame geodata is.geodata
The Box-Cox Transformed Normal Distributiondboxcox rboxcox
Box-Cox transformation for geodata objectsboxcox.geodata
Parameter Estimation for the Box-Cox Transformation.negloglik.boxcox boxcoxfit lines.boxcoxfit plot.boxcoxfit print.boxcoxfit
Calcium content in soil samplesca20
Calcium and magnesium content in soil samplescamg
Geometric Anisotropy Correctioncoords.aniso
Operations on Coordinatescoords2coords rect.coords zoom.coords zoom.coords.default zoom.coords.geodata
Computes Value of the Covariance Function.check.cov.model .cor.number cov.spatial geoRCovModels
Locates duplicated coordinatesdup.coords dup.coords.default dup.coords.geodata duplicated.geodata
Surface Elevationselevation
Interactive Variogram Estimationeyefit lines.eyefit plot.eyefit print.eyefit print.summary.eyefit summary.eyefit
Gambia Malaria Datagambia gambia.borders gambia.map
Defunct Functions in the Package geoR.proflik.ftau .proflik.nug .proflik.phi distdiag geoRdefunct likfit.nospatial likfit.old loglik.spatial olsfit wlsfit
Computes global varianceglobalvar
Simulation of Gaussian Random Fields.grf.aux1 grf grfclass lines.grf
Head observations in a regional confined aquiferhead
Plots Sample from Posterior Distributionshist.krige.bayes
Data for spatial analysis of experimentshoef
Image, Contour or Perspective Plot of Simulated Gaussian Random Field.geoR_fullGrid contour.grf image.grf persp.grf
Plots Results of the Predictive Distribution.prepare.graph.krige.bayes contour.krige.bayes image.krige.bayes persp.krige.bayes
Image or Perspective Plot with Kriging Results.prepare.graph.kriging contour.kriging image.kriging persp.kriging plot.1d
The (Scaled) Inverse Chi-Squared Distributiondinvchisq rinvchisq
Data from Isaaks and Srisvastava's bookisaaks
Jitters (duplicated) coordinates.jitter2d jitterDupCoords jitterDupCoords.default jitterDupCoords.geodata
Kattegat basin salinity datakattegat
Bayesian Analysis for Gaussian Geostatistical Modelskrige.bayes model.control post2prior print.krige.bayes print.posterior.krige.bayes prior.control
Spatial Prediction - Conventional Krigingkrige.control krige.conv
Computes kriging weightskrweights
Saturated Hydraulic ConductivityKsat
Spatial Prediction - Conventional Kriging.ksline.aux.1 ksline
Data from Landim's booklandim1
Add a legend to a image with kriging resultslegend.krige
Likelihood Based Parameter Estimation for Gaussian Random Fields.negloglik.GRF check.parameters.values fitted.likGRF likfit likfit.limits logLik.likGRF resid.likGRF residuals.likGRF
Fits the bivariate Gaussian common component geostatistical model.naiveLL.BGCCM .negloglikBGCCM likfitBGCCM loglikBGCCM
Line with a Empirical Variogramlines.variogram
Adds Envelopes Lines to a Variogram Plotlines.variogram.envelope
Adds a Line with a Variogram Model to a Variogram Plotlines.variomodel lines.variomodel.default
Lines with True Variogram for Simulated Datalines.variomodel.grf
Adds a Bayesian Estimate of the Variogram to a Plotlines.variomodel.krige.bayes
Adds a Variogram Line to a Variogram Plotlines.variomodel.likGRF
Adds a Line with a Fitted Variogram Model to a Variogram Plotlines.variomodel.variofit
Select prediction locations inside borderslocations.inside
Log-Likelihood for a Gaussian Random Fieldloglik.GRF
Computer Values of the Matern Correlation Functionmatern
Lists names of the key elements of a geodata objectnames.geodata
Near location to a pointnearloc
Defines output options for prediction functionsoutput.control
Rainfall Data from Parana State, Brasilmaijun parana
Set limits for the parameter valuespars.limits
Exploratory Geostatistical Plotsplot.geodata
Plots Variograms for Simulated Dataplot.grf
Plots Prior and/or Posterior Distributionsplot.krige.bayes
Plots Profile Likelihoods.proflik.plot.aux1 plot.proflik
Plot Directional Variogramsplot.variog4
Plot Empirical Variogramplot.variogram
Plot Cross-Validation Resultsplot.xvalid
Plots Spatial Locations and Data Valuespoints.geodata
Coordinates of Points Inside a Polygonpolygrid
Pratical range for correlation functionspracticalRange
Generates a 2D Prediction Gridpred_grid
Prediction for the bivariate Gaussian common component geostatistical modelpredict.BGCCM
Prints an summary of of the output from likfitBGCCM.print.BGCCM
Computes Profile Likelihoods.proflik.aux0 .proflik.aux1 .proflik.aux1.1 .proflik.aux10 .proflik.aux11 .proflik.aux12 .proflik.aux13 .proflik.aux14 .proflik.aux15 .proflik.aux16 .proflik.aux17 .proflik.aux18 .proflik.aux19 .proflik.aux2 .proflik.aux20 .proflik.aux21 .proflik.aux21.1 .proflik.aux22 .proflik.aux23 .proflik.aux24 .proflik.aux27 .proflik.aux28 .proflik.aux3 .proflik.aux30 .proflik.aux31 .proflik.aux32 .proflik.aux33 .proflik.aux4 .proflik.aux5 .proflik.aux6 .proflik.aux7 .proflik.aux8 .proflik.aux9 .proflik.cov .proflik.lambda .proflik.main proflik
Reads and Converts Data to geoR Formatread.geodata
Radionuclide Concentrations on Rongelap Islandrongelap
Simulated Data-Sets which Illustrate the Usage of the Package geoRs100 s121
Simulated Data-Set which Illustrate the Usage of krige.bayess256i
Sampling from geodata objectssample.geodata
Samples from the posterior distributionsample.posterior
Sample the prior distributionsample.prior
Sets Limits to Scale Plotsset.coords.lims
Spatial Interpolation Comparison dataSIC sic sic.100 sic.367 sic.all sic.borders sic.some
Soil chemistry properties data setsoil250
Soya bean production and other variables in a uniformity trialsoja98
Summary statistics from predictive distributionsstatistics.predictive
Selects a Subarea from a Geodata Objectsubarea
Method for subsetting geodata objectssubset.geodata
Summaries for geodata objectprint.summary.geodata summary.geodata
Summarizes Parameter Estimation Results for Gaussian Random Fieldsprint.likGRF print.summary.likGRF summary.likGRF
Summarize Results of Variogram Estimationprint.summary.variofit print.variofit summary.variofit
TCE concentrations in groundwater in a vertical cross sectiontce
Builds the Trend Matrixtrend.spatial
Computes Covariance Matrix and Related Resultsvarcov.spatial
Covariance matrix for the bivariate Gaussian common component geostatistical model.cov012.model .dist12 varcovBGCCM
Variogram Based Parameter Estimation.loss.vario variofit
Compute Empirical Variograms.define.bins .rfm.bin variog
Envelops for Empirical Variograms Based on Permutationvariog.mc.env
Envelops for Empirical Variograms Based on Model Parametersboot.variofit variog.model.env
Computes Directional Variogramsvariog4
Kriging example data from Webster and Oliverwo
Wolfcamp Aquifer Datawolf wolfcamp
Wrappers for the C functions used in geoR.bilinearformXAY .Ccor.spatial .corr.diaglowertri .diagquadraticformXAX diffpairs loccoords wrappers
Points of a water retention curve data setwrc
Cross-validation by krigingprint.summary.xvalid summary.xvalid xvalid